Structural Topic Modeling with R — Part I

Jovan Trajceski
4 min readMay 18, 2021

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Topic models allow us to summarize unstructured text, find clusters (hidden topics) where each observation or document (in our case, news article) is assigned a (Bayesian) probability of belonging to a specific topic.

The most common form of topic modeling is LDA (Latent Dirichlet Allocation). Other techniques exist, such as Dynamic Topic Models, Correlated Topic Models, Hierarchical Topic Models.

Structural topic modeling (STM) has been increasing in popularity over recent years. STM is essentially LDA that employs metadata to improve word assignment to topics within a corpus (collection of news articles).

So we can easily say, STM = LDA + metadata.

We will be using the Daily Financial News dataset published on Kaggle. The dataset includes approximately 2 million articles for 6000 stocks from 2009–2020.

There is an R package called stm, which provides almost everything we need for our first Structural Topic Model.

stm package overview

Let's load the required libraries (these will be used in Part II of this article as well):

Load original dataset and check for NAs:

Original dataset overview

Let's randomly sample 1,000 rows out of the loaded dataset (feel free to reduce the sample size if your laptop can't handle it).

Our sample news

We will apply few preprocessing steps to our sample, including:
• Convert to lower case
• Remove Stop-Words
• Remove numbers
• Remove punctuation
• Words shorter than the minimum word length are discarded
• Stemming
• Replace all non-alphanumeric characters
• Create output

The processed object is a list of four objects: documents, vocab, meta, and docs removed. The document object is a list, one per document, of 2-row matrices; the first row indicates the index of a word found in the document, and the second row indicates the (nonzero) counts. If preprocessing causes any documents to be empty, they are removed, as are the corresponding rows of the meta-object.

Let's filter out terms that do not appear in more than ten documents (our threshold — you can change this as desired).

Also, we will level check for “publisher” and “stock” columns before proceeding with the structural topic model.

Our corpus now has 882 documents, 103 terms, and 2334 tokens.
This is what we have currently under our data panel in RStudio.

Let`s run our initial topic model [prevalence =~ publisher + date] at 15 topics (without finding optimal k), see how long it takes to run, and what the output looks like.

Initial STM at 15 topics.
It took 2 seconds for our first model to run. The model was terminated before convergence was reached.
In our first STM plot, we can see topic 8 took the lead.

We can run a second preliminary topic model [prevalence =~ publisher + date] at 18 topics (without finding optimal k) but add 75 iterations, see how long it takes to run, and review its respective output.

Both STM models produce meaningful topics and keywords.

The second STM took 19 seconds to run.
The plot of our second STM — we can see topic 17 is in the lead.

Next, we need to identify the number of optimal topics.

I will showcase three approaches in finding an optimal number of topics (k) that we can apply to the final version of our STM:

Approach 1: use “searchK” function and look through 10 to 30 topics; no other parameters set

Approach 2: use “searchK” function, search through 10, 20, 30, 40, 50, 60, 70 k tries, N= 500 and 75 iterations

Approach 3: “Lee Mimno” via stm where k=0 and iterations = 75

Approach 1 in finding the optimal number of topics

Approach 1 takes approximately 23 minutes on i7 CPU. The guideline is usually where the held-out likelihood is highest, and the residuals are lowest. It looks like 17 optimal topics under this approach.

Approach 1: finding an optimal topic number.

Approach 2 takes approximately 6 minutes. It looks like 20 optimal topics under this approach.

Console screenshot: Approach 2 in finding optimal k.
Approach 2: finding an optimal topic number.

Approach 3 takes approximately 29 seconds. It looks like 27 optimal topics under this approach.

Approach 3: finding an optimal topic number.

Based on the above, I have decided to run the final STM on 20 topics. The final STM runs in about 20 seconds.

Final Structural Topic Model.

In Part II of this article, I will evaluate the model and explore other aspects of structural topic modeling.

If you find this article of interest, please like and comment. Until next time!

Reference:

  1. The Structural Topic Model and Applied Social Science. https://scholar.princeton.edu/files/bstewart/files/stmnips2013.pdf
  2. stm package for R. https://www.structuraltopicmodel.com/

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Jovan Trajceski
Jovan Trajceski

Written by Jovan Trajceski

MSc. Data Analytics (HKBU, Hong Kong) and CPA (Toronto, Canada) designated professional with a passion for Data Science, Digital Transformation, and Analytics.

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